MolNFT v2 · #158322 · protein
Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer Bound to Small Molecule HIV-1 Entry Inhibitor Compound 484 in Complex with Human Antibodies 3H109L and 35O22 at 3.0 Angstrom
6MTN: “Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer Bound to Small Molecule HIV-1 Entry Inhibitor…”. X-ray diffraction at 2.5, 4 ligands (JYJ, NAG, MAN). MolNFT v2 #158322 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6MTN
- Type
- protein
- Length
- 1,237 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Homo sapiens; Human immunodeficiency virus 1
- UniProt
- Q2N0S6
- Ligands
- JYJ, NAG, MAN, BMA
Structure
x-ray diffraction · resolution 2.5 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 128 | — | Q2N0S6 |
| D | — | protein | 128 | — | — |
| E | — | protein | 105 | — | — |
| G | — | protein | 439 | — | Q2N0S6 |
| H | — | protein | 226 | — | — |
| L | — | protein | 211 | — | — |
Ligands and binding sites
- JYJ · {4-[1-(3-chlorophenyl)cyclopropane-1-carbonyl]piperazin-1-yl}(thiophen-3-yl)methanone · ligand · chains G
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 27 copies · chains D, B, G, H, E
- MAN · alpha-D-mannopyranose · sugar · 10 copies · chains D, E, H, L
- BMA · beta-D-mannopyranose · sugar · 4 copies · chains D, E, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MTN · Crystal structure of HIV-1 BG505 SOSIP.664 prefusion env trimer bound to small molecule… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 6MTN · PDBe 6MTN · UniProt Q2N0S6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.