MolNFT v2 · #158131 · protein
Structure of dengue virus protease with an allosteric Inhibitor that blocks replication
6MO2 · FLAVIVIRUS_NS2B/Peptidase S7: “Structure of dengue virus protease with an allosteric Inhibitor that blocks replication”. X-ray diffraction at 2.8, 1 ligand (JVM), 6 pockets (best druggability 0.50). MolNFT v2 #158131 on GenesisL1…
- PDB
- 6MO2
- Type
- protein
- Length
- 328 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.8
- Source
- Dengue virus 2
- Molecule
- FLAVIVIRUS_NS2B/Peptidase S7
- UniProt
- A0A0B4L2Y4, Q91H74
- Ligands
- JVM
- Pockets
- 6 · best druggability 0.50
Structure
x-ray diffraction · resolution 2.8 · 1 distinct chain · 4% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | FLAVIVIRUS_NS2B/Peptidase S7 | protein | 164 | 4% helix, 44% strand | A0A0B4L2Y4, Q91H74 |
Ligands and binding sites
- JVM · 1-(4-{5-[(piperidin-4-yl)methoxy]-3-[4-(1H-pyrazol-4-yl)phenyl]pyrazin-2-yl}phenyl)methanamine · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 151 | 0.50 | 0.78 | 17 | empty |
| 2 | 124 | 0.50 | 0.80 | 23 | empty |
| 3 | 133 | 0.49 | 0.78 | 16 | empty |
| 4 | 113 | 0.42 | 0.77 | 15 | empty |
| 5 | 114 | 0.35 | 0.73 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 228 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6MO2 · Structure of dengue virus protease with an allosteric inhibitor that blocks replication · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0B4L2Y4
- Every structure of UniProt Q91H74
- Elsewhere: RCSB PDB 6MO2 · PDBe 6MO2 · UniProt A0A0B4L2Y4 · UniProt Q91H74
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