MolNFT v2 · #157782 · protein
Crystal structure of Streptococcus pyogenes endo-beta-N-acetylglucosaminidase (EndoS2) with high-mannose glycan
6MDV: “Crystal structure of Streptococcus pyogenes endo-beta-N-acetylglucosaminidase (EndoS2) with high-mannose…”. X-ray diffraction at 2.5, 4 ligands (MAN, NAG, BMA). MolNFT v2 #157782 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6MDV
- Type
- protein
- Length
- 1,574 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Streptococcus pyogenes
- UniProt
- T1WGN1
- Ligands
- MAN, NAG, BMA, CA
Structure
x-ray diffraction · resolution 2.5 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 787 | — | T1WGN1 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 11 copies · chains A, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MDV · Crystal structure of streptococcus pyogenes endo-beta-N- acetylglucosaminidase (ENDOS2)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt T1WGN1
- Elsewhere: RCSB PDB 6MDV · PDBe 6MDV · UniProt T1WGN1
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