MolNFT v2 · #157774 · protein
The 20S supercomplex engaging the SNAP-25 N-terminus (class 2)
6MDN: “The 20S supercomplex engaging the SNAP-25 N-terminus (class 2)”. Electron microscopy at 4.4, 2 ligands (ATP, ADP). MolNFT v2 #157774 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MDN
- Type
- protein
- Length
- 4,632 residues
- Chains
- 11
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 4.4
- Source
- Cricetulus griseus; Rattus norvegicus
- UniProt
- P18708, P60881, P32851, P63045, P54921
- Ligands
- ATP, ADP
Structure
electron microscopy · resolution 4.4 · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 511 | — | P18708 |
| B | — | protein | 707 | — | P18708 |
| C | — | protein | 709 | — | P18708 |
| D | — | protein | 713 | — | P18708 |
| E | — | protein | 697 | — | P18708 |
| F | — | protein | 449 | — | P18708 |
| H | — | protein | 147 | — | P60881 |
| I | — | protein | 66 | — | P32851 |
| J | — | protein | 61 | — | P63045 |
| K, L | — | protein | 286 | — | P54921 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 9 copies · chains A, F, B, C, D, E
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MDN · The 20S supercomplex engaging the snap-25 N-terminus (class 2) · the same entry in another collection · chain L against L, TM-score 1.00
- P54921 · AlphaFold monomer V2.0 prediction for alpha-soluble nsf attachment protein (P54921) · a predicted model of the same protein · chain K against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P18708
- Every structure of UniProt P60881
- Every structure of UniProt P32851
- Every structure of UniProt P63045
- Every structure of UniProt P54921
- Elsewhere: RCSB PDB 6MDN · PDBe 6MDN · UniProt P18708 · UniProt P60881 · UniProt P32851 · UniProt P63045 · UniProt P54921
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