MolNFT v2 · #157603 · protein
Crystal structure of TylM1 Y14paF bound to SAH and dTDP-phenol
6M82: “Crystal structure of TylM1 Y14paF bound to SAH and dTDP-phenol”. X-ray diffraction at 1.3971, 1 ligand (TLO). MolNFT v2 #157603 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6M82
- Type
- protein
- Length
- 238 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.3971
- Source
- Streptomyces fradiae
- UniProt
- P95748
- Ligands
- TLO
Structure
x-ray diffraction · resolution 1.3971 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 238 | — | P95748 |
Ligands and binding sites
- TLO · 5'-O-[(S)-hydroxy{[(s)-hydroxy(phenoxy) phosphoryl]oxy}phosphoryl]thymidine · ligand · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6M82 · Crystal structure of TYLM1 Y14PAF bound to sah and dtdp-phenol · the same entry in another collection · chain A against A, TM-score 1.00
- P95748 · AlphaFold monomer V2.0 prediction for dtdp-3-amino-3,6-dideoxy-alpha- D-glucopyranose… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P95748
- Elsewhere: RCSB PDB 6M82 · PDBe 6M82 · UniProt P95748
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