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MolNFT v2 · #157223 · protein

USP14 catalytic domain mutant C114S

6LVS: “USP14 catalytic domain mutant C114S”. X-ray diffraction at 2.73, 1 ligand (NA). MolNFT v2 #157223 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6LVS
Type
protein
Length
1,982 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.73
Source
Homo sapiens
UniProt
P54578
Ligands
NA

Structure

x-ray diffraction · resolution 2.73 · 6 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein331—P54578
B—protein330—P54578
C—protein333—P54578
D—protein329—P54578
E—protein328—P54578
F—protein331—P54578

Ligands and binding sites

  • NA · Sodium ion · metal · 41 copies · chains A, B, C, D, E, F
  • FMT · Formic acid · additive · 26 copies · chains A, B, C, D, E, F
  • GOL · Glycerol · additive · 12 copies · chains A, C, B, D, E
  • BME · Beta-mercaptoethanol · additive · 9 copies · chains A, B, C, E, F
  • EDO · 1,2-ethanediol · additive · chains E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6LVS · USP14 catalytic domain mutant C114S · the same entry in another collection · chain F against F, TM-score 1.00
  • P54578 · AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 14 (P54578) · a predicted model of the same protein · chain B against A, TM-score 0.99

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