MolNFT v2 · #156812 · protein
Crystal structure of human Glutamate oxaloacetate transaminase 1 (GOT1) in complex with AH
6LIG: “Crystal structure of human Glutamate oxaloacetate transaminase 1 (GOT1) in complex with AH”. X-ray diffraction at 2.62, 2 ligands (EE6, PLP), 10 pockets (best druggability 0.75). MolNFT v2 #156812 on GenesisL1: 3D structure, binding…
- PDB
- 6LIG
- Type
- protein
- Length
- 820 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.62
- Source
- Homo sapiens
- Molecule
- Glutamate oxaloacetate transaminase 1
- EC
- 2.6.1.1, 2.6.1.3
- UniProt
- P17174
- Ligands
- EE6, PLP
- Pockets
- 10 · best druggability 0.75
Structure
x-ray diffraction · resolution 2.62 · 1 distinct chain · 46% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glutamate oxaloacetate transaminase 1 (EC 2.6.1.1, 2.6.1.3) | protein | 410 | 46% helix, 12% strand | P17174 |
Ligands and binding sites
- EE6 · 3-[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]-5-[[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]methylidene]-4-oxidanyl-furan-2-one · ligand · chains A, B
- PLP · Pyridoxal-5'-phosphate · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 665 | 0.75 | 0.81 | 51 | EE6 |
| 2 | 588 | 0.73 | 0.81 | 65 | PLP |
| 3 | 89 | 0.68 | 0.93 | 26 | empty |
| 4 | 394 | 0.56 | 0.74 | 40 | empty |
| 5 | 143 | 0.49 | 0.78 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 3159 Ų buried · 54 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 6LIG · Crystal structure of human glutamate oxaloacetate transaminase 1 (GOT1) in complex with ah · the same entry in another collection · chain A against A, TM-score 1.00
- P17174 · AlphaFold monomer V2.0 prediction for aspartate aminotransferase, cytoplasmic (P17174) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17174
- Elsewhere: RCSB PDB 6LIG · PDBe 6LIG · UniProt P17174
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