MolNFT v2 · #156639 · protein
Zika NS5 polymerase domain
6LD2: “Zika NS5 polymerase domain”. X-ray diffraction at 1.4, 2 ligands (KY3, ZN). MolNFT v2 #156639 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LD2
- Type
- protein
- Length
- 565 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.4
- Source
- Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013)
- UniProt
- A0A024B7W1
- Ligands
- KY3, ZN
Structure
x-ray diffraction · resolution 1.4 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 565 | — | A0A024B7W1 |
Ligands and binding sites
- KY3 · (1S,2S,4S,5R)-2,4-dimethoxy-5-thiophen-2-yl-cyclohexane-1-carboxylic acid · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6LD2 · Zika NS5 polymerase domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A024B7W1
- Elsewhere: RCSB PDB 6LD2 · PDBe 6LD2 · UniProt A0A024B7W1
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