MolNFT v2 · #156354 · protein
Crystal Structure of Lysyl-tRNA Synthetase from Plasmodium falciparum complexed with L-lysine and Clado-C
6L3Y: “Crystal Structure of Lysyl-tRNA Synthetase from Plasmodium falciparum complexed with L-lysine and Clado-C”. X-ray diffraction at 3.1, 2 ligands (E5C, PO4). MolNFT v2 #156354 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6L3Y
- Type
- protein
- Length
- 968 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.1
- Source
- Plasmodium falciparum 3D7
- UniProt
- Q8IDJ8
- Ligands
- E5C, PO4
Structure
x-ray diffraction · resolution 3.1 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 485 | — | Q8IDJ8 |
| A | — | protein | 483 | — | Q8IDJ8 |
Ligands and binding sites
- E5C · (3R)-3-[[(3S)-3-ethylpiperidin-1-yl]methyl]-6,8-bis(oxidanyl)-3,4-dihydroisochromen-1-one · ligand · 2 copies · chains B, A
- PO4 · Phosphate ion · ion · 5 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6L3Y · Crystal structure of lysyl-tRNA synthetase from plasmodium falciparum complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IDJ8
- Elsewhere: RCSB PDB 6L3Y · PDBe 6L3Y · UniProt Q8IDJ8
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