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MolNFT v2 · #155981 · protein

Crystal structure of mouse IgG2b Fc

6KRU: “Crystal structure of mouse IgG2b Fc”. X-ray diffraction at 2.3, 4 ligands (NAG, MAN, GAL). MolNFT v2 #155981 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6KRU
Type
protein
Length
1,215 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.3
Source
Mus musculus
UniProt
P01867
Ligands
NAG, MAN, GAL, FUC

Structure

x-ray diffraction · resolution 2.3 · 5 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B—protein208—P01867
C—protein203—P01867
D—protein201—P01867
E—protein191—P01867
F—protein204—P01867

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 24 copies · chains A, B, C, D, E, F
  • MAN · alpha-D-mannopyranose · sugar · 18 copies · chains A, D, B, C, E, F
  • GAL · beta-D-galactopyranose · sugar · 6 copies · chains A, B, C, D, E, F
  • FUC · alpha-L-fucopyranose · sugar · 5 copies · chains A, D, B, C, E, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6KRU · Crystal structure of mouse IGG2B Fc · the same entry in another collection · chain F against F, TM-score 1.00
  • P01867 · AlphaFold monomer V2.0 prediction for ig gamma-2B chain C region (P01867) · a predicted model of the same protein · chain A against A, TM-score 0.97

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