MolNFT v2 · #155732 · protein
Huge conformation shift of Vibrio cholerae VqmA dimer in the absence of target DNA provides insight into DNA-binding mechanisms of LuxR-type receptors
6KJU: “Huge conformation shift of Vibrio cholerae VqmA dimer in the absence of target DNA provides insight into…”. X-ray diffraction at 1.75, 1 ligand (A1U). MolNFT v2 #155732 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KJU
- Type
- protein
- Length
- 448 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.75
- Source
- Vibrio cholerae
- UniProt
- A0A0F0AZW0
- Ligands
- A1U
Structure
x-ray diffraction · resolution 1.75 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 221 | — | A0A0F0AZW0 |
| B | — | protein | 227 | — | A0A0F0AZW0 |
Ligands and binding sites
- A1U · 3,5-dimethylpyrazin-2-ol · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6KJU · Huge conformation shift of vibrio cholerae vqma dimer in the absence of target DNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F0AZW0
- Elsewhere: RCSB PDB 6KJU · PDBe 6KJU · UniProt A0A0F0AZW0
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