MolNFT v1 · #154704 · protein
Huge conformation shift of vibrio cholerae vqma dimer in the absence of target DNA provides insight into DNA-binding mechanisms of luxr- type receptors
6KJU: “Huge conformation shift of vibrio cholerae vqma dimer in the absence of target DNA provides insight into…”. X-ray diffraction, 1 ligand (A1U). MolNFT v1 #154704 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KJU
- Type
- protein
- Length
- 448 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0F0AZW0
- Ligands
- A1U
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 221 | — | A0A0F0AZW0 |
| B | — | protein | 227 | — | A0A0F0AZW0 |
Ligands and binding sites
- A1U · 3,5-dimethylpyrazin-2-ol · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6KJU · Huge conformation shift of Vibrio cholerae VqmA dimer in the absence of target DNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F0AZW0
- Elsewhere: RCSB PDB 6KJU · PDBe 6KJU · UniProt A0A0F0AZW0
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