MolNFT v2 · #155670 · protein

p62/SQSTM1 ZZ domain with Gly-peptide

6KHZ: “p62/SQSTM1 ZZ domain with Gly-peptide”. X-ray diffraction at 2.8, 1 ligand (ZN). MolNFT v2 #155670 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6KHZ
Type: protein
Length: 189 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.8
Source: Homo sapiens
UniProt: Q13501
Ligands: ZN

Structure

x-ray diffraction · resolution 2.8 · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	49	—	Q13501
C	—	protein	45	—	Q13501
D	—	protein	46	—	Q13501

Ligands and binding sites

ZN · Zinc ion · metal · 8 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6KHZ · P62/SQSTM1 zz domain with gly-peptide · the same entry in another collection · chain A against A, TM-score 1.00
Q13501 · AlphaFold monomer V2.0 prediction for sequestosome-1 (Q13501) · a predicted model of the same protein · chain C against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13501
Elsewhere: RCSB PDB 6KHZ · PDBe 6KHZ · UniProt Q13501

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