MolNFT v2 · #155516 · protein
Crystal structure of the extracellular domain of MSPL/TMPRSS13 in complex with dec-RVKR-cmk inhibitor
6KD5: “Crystal structure of the extracellular domain of MSPL/TMPRSS13 in complex with dec-RVKR-cmk inhibitor”. X-ray diffraction at 2.6, 4 ligands (NAG, FUC, CA). MolNFT v2 #155516 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6KD5
- Type
- protein
- Length
- 373 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.6
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- Q9BYE2
- Ligands
- NAG, FUC, CA, SO4
Structure
x-ray diffraction · resolution 2.6 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 131 | — | Q9BYE2 |
| B | — | protein | 238 | — | Q9BYE2 |
| C | — | protein | 4 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A, B
- FUC · alpha-L-fucopyranose · sugar · chains A
- CA · Calcium ion · metal · chains A
- SO4 · Sulfate ion · ion · 7 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6KD5 · Crystal structure of the extracellular domain of MSPL/TMPRSS13 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BYE2
- Elsewhere: RCSB PDB 6KD5 · PDBe 6KD5 · UniProt Q9BYE2
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