MolNFT v2 · #155210 · protein + RNA
RdRp complex
6K32: “RdRp complex”. Electron microscopy at 3.2, 5 ligands (MG7, DPO, A2M). MolNFT v2 #155210 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6K32
- Type
- protein + RNA
- Length
- 7,730 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.2
- Source
- Cypovirus 1
- UniProt
- D0EZK6, C7EWL9, D3JWE6
- Ligands
- MG7, DPO, A2M, UTP, MG
Structure
electron microscopy · resolution 3.2 · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1208 | — | D0EZK6 |
| B | — | protein | 498 | — | C7EWL9 |
| t | — | rna | 5 | — | — |
| p | — | rna | 2 | — | — |
| C | — | protein | 1220 | — | D3JWE6 |
| D | — | protein | 1197 | — | D3JWE6 |
| E, F | — | protein | 1191 | — | D3JWE6 |
| G | — | protein | 1218 | — | D3JWE6 |
Ligands and binding sites
- MG7 · 7-methylguanosine · ligand · chains A
- DPO · Diphosphate · ligand · chains A
- A2M · 2'-O-methyladenosine 5'-(dihydrogen phosphate) · ligand · chains A
- UTP · Uridine 5'-triphosphate · ligand · chains A, t, p
- MG · Magnesium ion · metal · 2 copies · chains A, p
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6K32 · Rdrp complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0EZK6
- Every structure of UniProt C7EWL9
- Every structure of UniProt D3JWE6
- Elsewhere: RCSB PDB 6K32 · PDBe 6K32 · UniProt D0EZK6 · UniProt C7EWL9 · UniProt D3JWE6
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