MolNFT v2 · #154474 · protein
Crystal structure of Pullulanase from Paenibacillus barengoltzii complex with maltohexaose and alpha-cyclodextrin
6JFJ: “Crystal structure of Pullulanase from Paenibacillus barengoltzii complex with maltohexaose and…”. X-ray diffraction at 1.932, 4 ligands (TAM, GLC, CA). MolNFT v2 #154474 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JFJ
- Type
- protein
- Length
- 646 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.932
- Source
- Paenibacillus barengoltzii
- UniProt
- A0A0C5GWS2
- Ligands
- TAM, GLC, CA, CL
Structure
x-ray diffraction · resolution 1.932 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 646 | — | A0A0C5GWS2 |
Ligands and binding sites
- TAM · Tris(hydroxyethyl)aminomethane · ligand · 2 copies · chains A
- GLC · alpha-D-glucopyranose · sugar · 11 copies · chains A
- CA · Calcium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · 8 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 10 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A
- IMD · Imidazole · additive · 4 copies · chains A
- PGE · Triethylene glycol · additive · 2 copies · chains A
- 1PE · Pentaethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JFJ · Crystal structure of pullulanase from paenibacillus barengoltzii complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0C5GWS2
- Elsewhere: RCSB PDB 6JFJ · PDBe 6JFJ · UniProt A0A0C5GWS2
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