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MolNFT v2 · #152261 · protein

Xray structure of GLIC in complex with fumarate

6HJ3: “Xray structure of GLIC in complex with fumarate”. X-ray diffraction at 2.7, 4 ligands (PLC, FUM, NA). MolNFT v2 #152261 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6HJ3
Type
protein
Length
1,555 residues
Chains
5
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.7
Source
Gloeobacter violaceus
UniProt
Q7NDN8
Ligands
PLC, FUM, NA, CL

Structure

x-ray diffraction · resolution 2.7 · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B, C, D, E—protein311—Q7NDN8

Ligands and binding sites

  • PLC · Diundecyl phosphatidyl choline · ligand · 15 copies · chains A, B, E, C, D
  • FUM · Fumaric acid · ligand · 5 copies · chains A, E, B, C, D
  • NA · Sodium ion · metal · 6 copies · chains A, B, C, D, E
  • CL · Chloride ion · ion · 12 copies · chains A, B, C, D, E
  • LMT · Dodecyl-beta-D-maltoside · additive · 6 copies · chains A, B, E, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6HJ3 · Xray structure of glic in complex with fumarate · the same entry in another collection · chain E against E, TM-score 1.00
  • Q7NDN8 · AlphaFold monomer V2.0 prediction for proton-gated ion channel (Q7NDN8) · a predicted model of the same protein · chain A against A, TM-score 1.00

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