MolNFT v2 · #152119 · protein
Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with the NVP-BHG712 derivative AT061
6HEV · Ephrin type-A receptor 2: “Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with the NVP-BHG712 derivative AT061”. X-ray diffraction at 1.28, 1 ligand (G0K), 1 pocket (best druggability 0.69). MolNFT v2 #152119 on…
- PDB
- 6HEV
- Type
- protein
- Length
- 275 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.28
- Source
- Homo sapiens
- Molecule
- Ephrin type-A receptor 2
- UniProt
- P29317
- Ligands
- G0K
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · resolution 1.28 · 1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ephrin type-A receptor 2 | protein | 275 | 41% helix, 17% strand | P29317 |
Ligands and binding sites
- G0K · 4-methyl-3-[(2-pyridin-3-ylpyrido[2,3-d]pyrimidin-4-yl)amino]-~{N}-[3-(trifluoromethyl)phenyl]benzamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 366 | 0.69 | 0.82 | 46 | G0K |
Compared structures
- 6HEV · Crystal structure of ephrin A2 (EPHA2) receptor protein kinase with the nvp-BHG712… · the same entry in another collection · chain A against A, TM-score 1.00
- P29317 · AlphaFold monomer V2.0 prediction for ephrin type-a receptor 2 (P29317) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29317
- Elsewhere: RCSB PDB 6HEV · PDBe 6HEV · UniProt P29317
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