MolNFT v2 · #151911 · protein
Crystal structure of Papain modify by achiral Ru(II)complex
6H8T: “Crystal structure of Papain modify by achiral Ru(II)complex”. X-ray diffraction at 2.1, 5 ligands (YXZ, YXX, NA). MolNFT v2 #151911 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H8T
- Type
- protein
- Length
- 424 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.1
- Source
- Carica papaya
- UniProt
- P00784
- Ligands
- YXZ, YXX, NA, CL, SO4
Structure
x-ray diffraction · resolution 2.1 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, J | — | protein | 212 | — | P00784 |
Ligands and binding sites
- YXZ · chloro[N,N-di(pyridin-2-yl-kappaN)pentane-1,5-diamine]ruthenium · ligand · chains A, J
- YXX · Chloro(1-{5-[di(pyridin-2-yl-kappan) amino]pentyl}pyrrolidine-2,5-dione)ruthenium · ligand · chains A, J
- NA · Sodium ion · metal · chains J
- CL · Chloride ion · ion · chains A
- SO4 · Sulfate ion · ion · chains A, J
- ACT · Acetate ion · additive · 9 copies · chains A, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00784
- Elsewhere: RCSB PDB 6H8T · PDBe 6H8T · UniProt P00784
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