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Ligand · YXZ

YXZ · chloro[N,N-di(pyridin-2-yl-kappaN)pentane-1,5-diamine]ruthenium

YXZ, chloro[N,N-di(pyridin-2-yl-kappaN)pentane-1,5-diamine]ruthenium (C15 H20 Cl N4 Ru, 392.9 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues…

Component
YXZ
Formula
C15 H20 Cl N4 Ru
Class
ligand
Structures
2
PDB entries
1

Binding sites

YXZ in 2 structures; the first of them:

  • 6H8T · Crystal structure of Papain modify by achiral Ru(II)complex · YXZ A305 · binds CYS25, TRP26, TYR61, ASN64, GLY65, GLY66, TYR67, PRO115 and 1 more
  • 6H8T · Crystal structure of papain modify by achiral RU(II)COMPLEX · YXZ A305 · binds CYS25, TRP26, TYR61, ASN64, GLY65, GLY66, TYR67, PRO115 and 1 more

Residues it binds most

TYR 2, GLY 2, ASN 2, CYS 2, PRO 2, TRP 2 (residue and the binding sites it lines).

Found with

  • YXX · Chloro(1-{5-[di(pyridin-2-yl-kappan) amino]pentyl}pyrrolidine-2,5-dione)ruthenium
  • NA · Sodium ion
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • ACT · Acetate ion

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