MolNFT v2 · #151893 · protein
Molybdenum storage protein prepared under in vivo-like conditions and incubated with ATP and molybdate at 303 K
6H8B: “Molybdenum storage protein prepared under in vivo-like conditions and incubated with ATP and molybdate at 303…”. X-ray diffraction at 1.9, 10 ligands (J7T, J7N, J8E). MolNFT v2 #151893 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6H8B
- Type
- protein
- Length
- 513 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.9
- Source
- Azotobacter vinelandii
- UniProt
- P84253, P84308
- Ligands
- J7T, J7N, J8E, FUQ, J7Q, ATP, J8B, J85, MG, MOO
Structure
x-ray diffraction · resolution 1.9 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 268 | — | P84253 |
| A | — | protein | 245 | — | P84308 |
Ligands and binding sites
- J7T · molybdate cluster · ligand · chains B, A
- J7N · 2,2,4-tris(oxidanyl)-1,3-dioxa-2$l^{4},4$l^{3}-dimolybdacyclobutane · ligand · chains B, A
- J8E · oxidanyl-[[2,2,4,4,4-pentakis($l^{1}-oxidanyl)-1-(oxidanylmolybdenio)-1$l^{3},3-dioxa-2$l^{5},4$l^{5}-dimolybdacyclobut-2-yl]oxy]molybdenum · ligand · chains B
- FUQ · Mo5 Cluster · ligand · chains B
- J7Q · tetrakis($l^{1}-oxidanyl)-[[2,2,2,4,4,4,4,6,6,6,8-undecakis($l^{1}-oxidanyl)-8-(oxidanylmolybdeniooxy)-6-[tris($l^{1}-oxidanyl)molybdeniooxy]-1,3,5,7-tetraoxa-2$l^{6},4$l^{6},6$l^{6},8$l^{4}-tetramolybdacyclooct-2-yl]oxy]molybdenum · ligand · chains A
- ATP · Adenosine-5'-triphosphate · ligand · chains A
- J8B · Molybdate cluster · ligand · chains A
- J85 · [[[bis(oxidanylmolybdenio)-$l^{3}-oxidanyl]-$l^{1}-oxidanyl-oxidanylidene-molybdenio]-(oxidanylmolybdenio)-$l^{3}-oxidanyl]-tetrakis($l^{1}-oxidanyl)molybdenum · ligand · chains A
- MG · Magnesium ion · metal · chains A
- MOO · Molybdate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H8B · Molybdenum storage protein prepared under in vivo-like conditions and incubated with ATP… · the same entry in another collection · chain A against A, TM-score 1.00
- P84308 · AlphaFold monomer V2.0 prediction for molybdenum storage protein subunit alpha (P84308) · a predicted model of the same protein · chain A against A, TM-score 1.00
- P84253 · AlphaFold monomer V2.0 prediction for molybdenum storage protein subunit beta (P84253) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P84253
- Every structure of UniProt P84308
- Elsewhere: RCSB PDB 6H8B · PDBe 6H8B · UniProt P84253 · UniProt P84308
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