GL1X · GenesisL1 explorer

MolNFT v2 · #151247 · protein

Crystal Structure of the CsiD Glutarate Hydroxylase in complex with N-Oxalylglycine

6GPN: “Crystal Structure of the CsiD Glutarate Hydroxylase in complex with N-Oxalylglycine”. X-ray diffraction at 2.2, 2 ligands (OGA, FE2). MolNFT v2 #151247 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6GPN
Type
protein
Length
581 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.2
Source
Escherichia coli (strain K12)
UniProt
P76621
Ligands
OGA, FE2

Structure

x-ray diffraction · resolution 2.2 · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein289—P76621
B—protein292—P76621

Ligands and binding sites

  • OGA · N-oxalylglycine · ligand · chains B
  • FE2 · Fe (II) ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6GPN · Crystal structure of the csid glutarate hydroxylase in complex with N- oxalylglycine · the same entry in another collection · chain A against A, TM-score 1.00
  • P76621 · AlphaFold monomer V2.0 prediction for glutarate 2-hydroxylase (P76621) · a predicted model of the same protein · chain B against A, TM-score 1.00

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