MolNFT v2 · #151207 · protein
X-ray structure of the adduct formed upon reaction of lysozyme with a Pt(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated sulphonate side chain
6GOH: “X-ray structure of the adduct formed upon reaction of lysozyme with a Pt(II) complex bearing…”. X-ray diffraction at 2.43, 3 ligands (F7T, PT, CL). MolNFT v2 #151207 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GOH
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.43
- Source
- Gallus gallus
- UniProt
- P00698
- Ligands
- F7T, PT, CL
Structure
x-ray diffraction · resolution 2.43 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 129 | — | P00698 |
Ligands and binding sites
- F7T · alkylated sulphonate-N,N-pyridylbenzimidazole-Pt complex · ligand · 2 copies · chains A
- PT · Platinum (II) ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · chains A
- DMS · Dimethyl sulfoxide · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GOH · X-ray structure of the adduct formed upon reaction of lysozyme with a PT(II) complex… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 6GOH · PDBe 6GOH · UniProt P00698
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