MolNFT v2 · #151038 · protein
A degradation product of PD 404182 (P2742) bound to Histone Deacetylase-like Amidohydrolase
6GJK: “A degradation product of PD 404182 (P2742) bound to Histone Deacetylase-like Amidohydrolase”. X-ray diffraction at 1.47, 4 ligands (F0Z, MLT, K). MolNFT v2 #151038 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GJK
- Type
- protein
- Length
- 738 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.47
- Source
- Alcaligenaceae bacterium FB188
- UniProt
- Q70I53
- Ligands
- F0Z, MLT, K, ZN
Structure
x-ray diffraction · resolution 1.47 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 369 | — | Q70I53 |
Ligands and binding sites
- F0Z · 2-(1,4,5,6-tetrahydropyrimidin-2-yl)benzenethiol · ligand · 4 copies · chains A, B
- MLT · D-malate · ligand · chains A, B
- K · Potassium ion · metal · 4 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 6 copies · chains A, B
- 1PE · Pentaethylene glycol · additive · 2 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GJK · A degradation product of pd 404182 (P2742) bound to histone deacetylase-like… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q70I53
- Elsewhere: RCSB PDB 6GJK · PDBe 6GJK · UniProt Q70I53
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