MolNFT v2 · #145549 · protein
Human ectonucleotide pyrophosphatase / phosphodiesterase 3 (ENPP3, NPP3, CD203c)
6C01: “Human ectonucleotide pyrophosphatase / phosphodiesterase 3 (ENPP3, NPP3, CD203c)”. X-ray diffraction at 2.3, 7 ligands (NAG, BMA, FUC). MolNFT v2 #145549 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6C01
- Type
- protein
- Length
- 1,626 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.3
- Source
- Homo sapiens
- UniProt
- O14638
- Ligands
- NAG, BMA, FUC, MAN, ZN, CA, NA
Structure
x-ray diffraction · resolution 2.3 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 819 | — | O14638 |
| B | — | protein | 807 | — | O14638 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 34 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · 7 copies
- FUC · alpha-L-fucopyranose · sugar · 7 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 5 copies
- ZN · Zinc ion · metal · 4 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6C01 · Human ectonucleotide pyrophosphatase / phosphodiesterase 3 (ENPP3, NPP3, CD203C) · the same entry in another collection · chain A against A, TM-score 1.00
- O14638 · AlphaFold monomer V2.0 prediction for ectonucleotide PYROPHOSPHATASE/PHOSPHODIESTERASE… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O14638
- Elsewhere: RCSB PDB 6C01 · PDBe 6C01 · UniProt O14638
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