MolNFT v2 · #144860 · protein
Crystal structure of monotopic membrane protein (S)-mandelate dehydrogenase
6BFG: “Crystal structure of monotopic membrane protein (S)-mandelate dehydrogenase”. X-ray diffraction at 2.2, 4 ligands (FMN, NA, SO4). MolNFT v2 #144860 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6BFG
- Type
- protein
- Length
- 746 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.2
- Source
- Pseudomonas putida
- UniProt
- P20932
- Ligands
- FMN, NA, SO4, PO4
Structure
x-ray diffraction · resolution 2.2 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 373 | — | P20932 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
- NA · Sodium ion · metal · chains B
- SO4 · Sulfate ion · ion · chains A
- PO4 · Phosphate ion · ion · chains B
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
- CIT · Citric acid · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains B
- LMT · Dodecyl-beta-D-maltoside · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6BFG · Crystal structure of monotopic membrane protein (S)-mandelate dehydrogenase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P20932
- Elsewhere: RCSB PDB 6BFG · PDBe 6BFG · UniProt P20932
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