MolNFT v2 · #142498 · protein
Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei with ferulenol
5ZDP: “Crystal structure of cyanide-insensitive alternative oxidase from Trypanosoma brucei with ferulenol”. X-ray diffraction at 2.71, 4 ligands (9AU, FE, OH). MolNFT v2 #142498 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5ZDP
- Type
- protein
- Length
- 1,058 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.71
- Source
- Trypanosoma brucei brucei
- UniProt
- Q26710
- Ligands
- 9AU, FE, OH, OXY
Structure
x-ray diffraction · resolution 2.71 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 264 | — | Q26710 |
| B | — | protein | 263 | — | Q26710 |
| C | — | protein | 266 | — | Q26710 |
| D | — | protein | 265 | — | Q26710 |
Ligands and binding sites
- 9AU · 4-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6, 10-trienyl]chromen-2-one · ligand · 4 copies · chains A, B, C, D
- FE · Fe (III) ion · metal · 8 copies · chains A, B, C, D
- OH · Hydroxide ion · ion · 4 copies · chains A, B, C, D
- OXY · Oxygen molecule · ion · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZDP · Crystal structure of cyanide-insensitive alternative oxidase from trypanosoma brucei with… · the same entry in another collection · chain D against D, TM-score 1.00
- Q26710 · AlphaFold monomer V2.0 prediction for alternative oxidase, mitochondrial (Q26710) · a predicted model of the same protein · chain D against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q26710
- Elsewhere: RCSB PDB 5ZDP · PDBe 5ZDP · UniProt Q26710
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