MolNFT v2 · #141980 · protein
Crystal structure of Arabidopsis thaliana HPPD complexed with Mesotrione
5YWG: “Crystal structure of Arabidopsis thaliana HPPD complexed with Mesotrione”. X-ray diffraction at 2.603, 2 ligands (92L, CO). MolNFT v2 #141980 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YWG
- Type
- protein
- Length
- 735 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.603
- Source
- Arabidopsis thaliana
- UniProt
- P93836
- Ligands
- 92L, CO
Structure
x-ray diffraction · resolution 2.603 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 366 | — | P93836 |
| B | — | protein | 369 | — | P93836 |
Ligands and binding sites
- 92L · 2-[(4-methylsulfonyl-2-nitro-phenyl)-oxidanyl-methylidene]cyclohexane-1,3-dione · ligand · 2 copies · chains A, B
- CO · Cobalt (II) ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YWG · Crystal structure of arabidopsis thaliana hppd complexed with mesotrione · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P93836
- Elsewhere: RCSB PDB 5YWG · PDBe 5YWG · UniProt P93836
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