MolNFT v2 · #141923 · protein + DNA

DNA polymerase IV - DNA ternary complex 2

5YUS: “DNA polymerase IV - DNA ternary complex 2”. X-ray diffraction at 1.94, 2 ligands (TTP, MG). MolNFT v2 #141923 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YUS
Type: protein + DNA
Length: 751 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.94
Source: Escherichia coli K-12; SYNTHETIC CONSTRUCT
UniProt: Q47155
Ligands: TTP, MG

Structure

x-ray diffraction · resolution 1.94 · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
F, A	—	protein	342	—	Q47155
G, B	—	dna	18	—	—
H	—	dna	14	—	—
C	—	dna	17	—	—

Ligands and binding sites

TTP · Thymidine-5'-triphosphate · ligand · 2 copies · chains F, G, H, A, B, C
MG · Magnesium ion · metal · 4 copies · chains F, H, A, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5YUS · DNA polymerase IV - DNA ternary complex 2 · the same entry in another collection · chain H against H, TM-score 1.00
Q47155 · AlphaFold monomer V2.0 prediction for DNA polymerase IV (Q47155) · a predicted model of the same protein · chain F against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q47155
Elsewhere: RCSB PDB 5YUS · PDBe 5YUS · UniProt Q47155

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