MolNFT v2 · #141134 · protein

Crystal structure of Ku80 and Sir4

5Y59: “Crystal structure of Ku80 and Sir4”. X-ray diffraction at 2.402, 1 ligand (SO4). MolNFT v2 #141134 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5Y59
Type: protein
Length: 200 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.402
Source: Saccharomyces cerevisiae; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
UniProt: Q04437, E7QD18
Ligands: SO4

Structure

x-ray diffraction · resolution 2.402 · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	—	protein	188	—	Q04437
C	—	protein	12	—	E7QD18

Ligands and binding sites

SO4 · Sulfate ion · ion · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5Y59 · Crystal structure of KU80 and SIR4 · the same entry in another collection · chain B against B, TM-score 1.00
Q04437 · AlphaFold monomer V2.0 prediction for ATP-dependent DNA helicase II subunit 2 (Q04437) · a predicted model of the same protein · chain B against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04437
Every structure of UniProt E7QD18
Elsewhere: RCSB PDB 5Y59 · PDBe 5Y59 · UniProt Q04437 · UniProt E7QD18

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