MolNFT v2 · #139617 · protein
Complex structure of PD-1 and nivolumab-Fab
5WT9: “Complex structure of PD-1 and nivolumab-Fab”. X-ray diffraction at 2.401, 2 ligands (NAG, FUC). MolNFT v2 #139617 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WT9
- Type
- protein
- Length
- 533 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.401
- Source
- Homo sapiens
- UniProt
- Q15116
- Ligands
- NAG, FUC
Structure
x-ray diffraction · resolution 2.401 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 208 | — | — |
| L | — | protein | 216 | — | — |
| G | — | protein | 109 | — | Q15116 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains G
- FUC · alpha-L-fucopyranose · sugar · chains G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WT9 · Complex structure of pd-1 and nivolumab-Fab · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15116
- Elsewhere: RCSB PDB 5WT9 · PDBe 5WT9 · UniProt Q15116
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