MolNFT v2 · #139278 · protein

Crystal structure of murine 4-1BB N128A mutant from HEK293T cells in P43 space group

5WIW: “Crystal structure of murine 4-1BB N128A mutant from HEK293T cells in P43 space group”. X-ray diffraction at 2.3, 5 ligands (NAG, BMA, MAN). MolNFT v2 #139278 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5WIW
Type: protein
Length: 216 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.3
Source: Mus musculus
UniProt: P20334
Ligands: NAG, BMA, MAN, FUC, SO4

Structure

x-ray diffraction · resolution 2.3 · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	109	—	P20334
B	—	protein	107	—	P20334

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains B, A
BMA · beta-D-mannopyranose · sugar
MAN · alpha-D-mannopyranose · sugar
FUC · alpha-L-fucopyranose · sugar · chains B
SO4 · Sulfate ion · ion · 3 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5WIW · Crystal structure of murine 4-1BB N128A mutant from HEK293T cells in P43 space group · the same entry in another collection · chain A against A, TM-score 1.00
P20334 · AlphaFold monomer V2.0 prediction for tumor necrosis factor receptor superfamily member 9… · a predicted model of the same protein · chain B against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P20334
Elsewhere: RCSB PDB 5WIW · PDBe 5WIW · UniProt P20334

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