MolNFT v2 · #139025 · protein
US28 bound to engineered chemokine CX3CL1.35 and nanobodies
5WB2: “US28 bound to engineered chemokine CX3CL1.35 and nanobodies”. X-ray diffraction at 3.5, 2 ligands (CLR, ZN). MolNFT v2 #139025 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WB2
- Type
- protein
- Length
- 621 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.5
- Source
- Homo sapiens; Human cytomegalovirus; Lama glama; synthetic construct
- UniProt
- Q80KM9, Q6I9S9
- Ligands
- CLR, ZN
Structure
x-ray diffraction · resolution 3.5 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 421 | — | Q80KM9 |
| B | — | protein | 73 | — | Q6I9S9 |
| D | — | protein | 127 | — | — |
Ligands and binding sites
- CLR · Cholesterol · ligand · 2 copies · chains A
- ZN · Zinc ion · metal · chains B
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 4 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WB2 · US28 bound to engineered chemokine CX3CL1.35 and nanobodies · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q80KM9
- Every structure of UniProt Q6I9S9
- Elsewhere: RCSB PDB 5WB2 · PDBe 5WB2 · UniProt Q80KM9 · UniProt Q6I9S9
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