MolNFT v2 · #138870 · protein
Crystal structure of BG505-SOSIP.v4.1-GT1-N137A in complex with Fabs 35022 and 9H/109L
5W6D: “Crystal structure of BG505-SOSIP.v4.1-GT1-N137A in complex with Fabs 35022 and 9H/109L”. X-ray diffraction at 3.202, 3 ligands (NAG, MAN, BMA). MolNFT v2 #138870 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5W6D
- Type
- protein
- Length
- 1,454 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.202
- Source
- Homo sapiens; Human immunodeficiency virus 1
- UniProt
- Q2N0S6
- Ligands
- NAG, MAN, BMA
Structure
x-ray diffraction · resolution 3.202 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G | — | protein | 447 | — | — |
| B | — | protein | 129 | — | Q2N0S6 |
| L | — | protein | 211 | — | — |
| H | — | protein | 231 | — | — |
| D | — | protein | 223 | — | — |
| E | — | protein | 213 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 20 copies · chains G, H, B, D
- MAN · alpha-D-mannopyranose · sugar · 17 copies · chains L, H, D, E, G
- BMA · beta-D-mannopyranose · sugar · 5 copies · chains H, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5W6D · Crystal structure of BG505-SOSIP.V4.1-GT1-N137A in complex with fabs 35022 and 9H/109L · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 5W6D · PDBe 5W6D · UniProt Q2N0S6
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