MolNFT v2 · #138155 · protein
Crystal structure of P[19] rotavirus VP8* complexed with LNFPI
5VKS: “Crystal structure of P[19] rotavirus VP8* complexed with LNFPI”. X-ray diffraction at 1.94, 5 ligands (GAL, GLC, NAG). MolNFT v2 #138155 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VKS
- Type
- protein
- Length
- 320 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.94
- Source
- Human rotavirus A
- UniProt
- A7YCM0
- Ligands
- GAL, GLC, NAG, FUC, SO4
Structure
x-ray diffraction · resolution 1.94 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 160 | — | A7YCM0 |
Ligands and binding sites
- GAL · beta-D-galactopyranose · sugar · 4 copies · chains A, B
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, B
- FUC · alpha-L-fucopyranose · sugar · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VKS · Crystal structure of P[19] rotavirus VP8* complexed with lnfpi · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7YCM0
- Elsewhere: RCSB PDB 5VKS · PDBe 5VKS · UniProt A7YCM0
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