MolNFT v2 · #138004 · protein
Room temperature X-ray crystallographic structure of a Jonesia denitrificans lytic polysaccharide monooxygenase at 1.1 angstrom resolution.
5VG0 · Chitinase: “Room temperature X-ray crystallographic structure of a Jonesia denitrificans lytic polysaccharide…”. X-ray diffraction at 1.1, 2 ligands (CU, PER). MolNFT v2 #138004 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 5VG0
- Type
- protein
- Length
- 284 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.1
- Source
- Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134)
- Molecule
- Chitinase
- EC
- 3.2.1.14
- UniProt
- C7R4I0
- Ligands
- CU, PER
Structure
x-ray diffraction · resolution 1.1 · 1 distinct chain · 15% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Chitinase (EC 3.2.1.14) | protein | 142 | 15% helix, 43% strand | C7R4I0 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 2 copies · chains A, B
- PER · Peroxide ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 478 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 5VG0 · Room temperature X-ray crystallographic structure of a jonesia denitrificans lytic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7R4I0
- Elsewhere: RCSB PDB 5VG0 · PDBe 5VG0 · UniProt C7R4I0
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