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Room temperature X-ray crystallographic structure of a Jonesia denitrificans lytic polysaccharide monooxygenase at 1.1 angstrom resolution.

Analyse Room temperature X-ray crystallographic structure of a Jonesia denitrificans… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5VG0
Type: protein
Length: 284 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.1
Source: Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134)
Molecule: Chitinase
EC: 3.2.1.14
UniProt: C7R4I0
Ligands: CU, PER

Structure

x-ray diffraction · resolution 1.1 · 1 distinct chain · 15% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Chitinase (EC 3.2.1.14)	protein	142	15% helix, 43% strand	C7R4I0

Ligands and binding sites

CU · Copper (II) ion · metal · 2 copies · chains A, B
PER · Peroxide ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 478 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

5VG0 · Room temperature X-ray crystallographic structure of a jonesia denitrificans lytic… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7R4I0
Elsewhere: RCSB PDB 5VG0 · PDBe 5VG0 · UniProt C7R4I0

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