MolNFT v2 · #137645 · protein
Structure of HLA-DR15 with bound alpha3(135-145) peptide
5V4M: “Structure of HLA-DR15 with bound alpha3(135-145) peptide”. X-ray diffraction at 2.1, 2 ligands (NAG, FUC). MolNFT v2 #137645 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5V4M
- Type
- protein
- Length
- 1,512 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.1
- Source
- Homo sapiens
- UniProt
- P01903, P01911
- Ligands
- NAG, FUC
Structure
x-ray diffraction · resolution 2.1 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D, A, G, J | — | protein | 178 | — | P01903 |
| F, C, I, L | — | protein | 200 | — | P01911 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 10 copies · chains D, A, C, G, J
- FUC · alpha-L-fucopyranose · sugar · 4 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5V4M · Structure of HLA-DR15 with bound ALPHA3(135-145) peptide · the same entry in another collection · chain L against L, TM-score 1.00
- P01903 · AlphaFold monomer V2.0 prediction for HLA class II histocompatibility antigen, dr alpha… · a predicted model of the same protein · chain G against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01903
- Every structure of UniProt P01911
- Elsewhere: RCSB PDB 5V4M · PDBe 5V4M · UniProt P01903 · UniProt P01911
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