MolNFT v2 · #136571 · protein + DNA

DNA Polymerase Beta S229L crystallized in PEG 400

5U8I: “DNA Polymerase Beta S229L crystallized in PEG 400”. X-ray diffraction at 2.45, 1 ligand (NA). MolNFT v2 #136571 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5U8I
Type: protein + DNA
Length: 349 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.45
Source: Homo sapiens; SYNTHETIC CONSTRUCT
UniProt: P06746
Ligands: NA

Structure

x-ray diffraction · resolution 2.45 · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	318	—	P06746
T	—	dna	16	—	—
P	—	dna	10	—	—
D	—	dna	5	—	—

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A, D, P

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5U8I · DNA polymerase beta S229L crystallized in peg 400 · the same entry in another collection · chain A against A, TM-score 1.00
P06746 · AlphaFold monomer V2.0 prediction for DNA polymerase beta (P06746) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06746
Elsewhere: RCSB PDB 5U8I · PDBe 5U8I · UniProt P06746

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