MolNFT v2 · #136127 · protein
Crystal structure of AChBP from Aplysia californica complex with 2-aminopyrimidine at pH 8.0 spacegroup P21
5TVH: “Crystal structure of AChBP from Aplysia californica complex with 2-aminopyrimidine at pH 8.0 spacegroup P21”. X-ray diffraction at 2.4, 2 ligands (7KO, NAG). MolNFT v2 #136127 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5TVH
- Type
- protein
- Length
- 1,064 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.4
- Source
- Aplysia californica
- UniProt
- Q8WSF8
- Ligands
- 7KO, NAG
Structure
x-ray diffraction · resolution 2.4 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 214 | — | Q8WSF8 |
| B | — | protein | 209 | — | Q8WSF8 |
| C | — | protein | 211 | — | Q8WSF8 |
| D | — | protein | 217 | — | Q8WSF8 |
| E | — | protein | 213 | — | Q8WSF8 |
Ligands and binding sites
- 7KO · 6-chloro-N~4~,N~4~-bis[(pyridin-3-yl)methyl]pyrimidine-2,4-diamine · ligand · 5 copies · chains A, E, B, C, D
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains D
- DMS · Dimethyl sulfoxide · additive · 4 copies · chains A, B, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5TVH · Crystal structure of achbp from aplysia californica complex with 2- aminopyrimidine at pH… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8WSF8
- Elsewhere: RCSB PDB 5TVH · PDBe 5TVH · UniProt Q8WSF8
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