MolNFT v2 · #129988 · protein
Cryo-EM structure of F-actin in complex with AppNHp (AMPPNP)
5OOE: “Cryo-EM structure of F-actin in complex with AppNHp (AMPPNP)”. Electron microscopy at 3.6, 2 ligands (ANP, MG). MolNFT v2 #129988 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OOE
- Type
- protein
- Length
- 1,810 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.6
- Source
- Oryctolagus cuniculus
- UniProt
- P68135
- Ligands
- ANP, MG
Structure
electron microscopy · resolution 3.6 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | — | protein | 362 | — | P68135 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · 5 copies · chains A, B, C, D, E
- MG · Magnesium ion · metal · 5 copies · chains A, B, C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OOE · Cryo-EM structure of F-actin in complex with appnhp (amppnp) · the same entry in another collection · chain E against E, TM-score 1.00
- P68135 · AlphaFold monomer V2.0 prediction for actin, alpha skeletal muscle (P68135) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68135
- Elsewhere: RCSB PDB 5OOE · PDBe 5OOE · UniProt P68135
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