MolNFT v2 · #129913 · protein
Crystal structure of K. lactis Ddc2 N-terminus in complex with S. cerevisiae Rfa1 N-OB domain
5OMB: “Crystal structure of K. lactis Ddc2 N-terminus in complex with S. cerevisiae Rfa1 N-OB domain”. X-ray diffraction at 1.94, 1 ligand (CL). MolNFT v2 #129913 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OMB
- Type
- protein
- Length
- 448 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.94
- Source
- Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /…
- UniProt
- P22336, Q6CUV9
- Ligands
- CL
Structure
x-ray diffraction · resolution 1.94 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 124 | — | P22336 |
| B | — | protein | 128 | — | P22336 |
| C, D | — | protein | 98 | — | Q6CUV9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OMB · Crystal structure of K. lactis DDC2 N-terminus in complex with S. cerevisiae RFA1 N-ob… · the same entry in another collection · chain A against A, TM-score 1.00
- P22336 · AlphaFold monomer V2.0 prediction for replication factor a protein 1 (P22336) · a predicted model of the same protein · chain A against A, TM-score 0.97
- Q6CUV9 · AlphaFold monomer V2.0 prediction for DNA damage checkpoint protein LCD1 (Q6CUV9) · a predicted model of the same protein · chain C against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22336
- Every structure of UniProt Q6CUV9
- Elsewhere: RCSB PDB 5OMB · PDBe 5OMB · UniProt P22336 · UniProt Q6CUV9
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