MolNFT v2 · #128113 · protein
VIM-2 metallo-beta-lactamase in complex with ((S)-3-mercapto-2-methylpropanoyl)-L-tryptophan (Compound 4)
5N4T: “VIM-2 metallo-beta-lactamase in complex with ((S)-3-mercapto-2-methylpropanoyl)-L-tryptophan (Compound 4)”. X-ray diffraction at 1.16, 3 ligands (R59, BEZ, ZN). MolNFT v2 #128113 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 5N4T
- Type
- protein
- Length
- 466 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.16
- Source
- Pseudomonas aeruginosa
- UniProt
- Q9K2N0
- Ligands
- R59, BEZ, ZN
Structure
x-ray diffraction · resolution 1.16 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 234 | — | Q9K2N0 |
| B | — | protein | 232 | — | Q9K2N0 |
Ligands and binding sites
- R59 · (2~{S})-3-(1~{H}-indol-3-yl)-2-[[(2~{S})-2-methyl-3-sulfanyl-propanoyl]amino]propanoic acid · ligand · 2 copies · chains A, B
- BEZ · Benzoic acid · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 6 copies · chains A, B
- FMT · Formic acid · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5N4T · Vim-2 metallo-beta-lactamase in complex with ((S)-3-mercapto-2… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9K2N0
- Elsewhere: RCSB PDB 5N4T · PDBe 5N4T · UniProt Q9K2N0
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