GL1X · GenesisL1 explorer

MolNFT v2 · #127935 · protein

Helicase Sen1

5MZN: “Helicase Sen1”. X-ray diffraction at 1.787, 2 ligands (ADP, MG). MolNFT v2 #127935 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5MZN
Type
protein
Length
682 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.787
Source
Saccharomyces cerevisiae S288c
UniProt
Q00416
Ligands
ADP, MG

Structure

x-ray diffraction · resolution 1.787 · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein682—Q00416

Ligands and binding sites

  • ADP · Adenosine-5'-diphosphate · ligand · chains A
  • MG · Magnesium ion · metal · chains A
  • EDO · 1,2-ethanediol · additive · 40 copies · chains A
  • GOL · Glycerol · additive · 12 copies · chains A
  • PEG · Di(hydroxyethyl)ether · additive · 11 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5MZN · Helicase SEN1 · the same entry in another collection · chain A against A, TM-score 1.00
  • Q00416 · AlphaFold monomer V2.0 prediction for helicase SEN1 (Q00416) · a predicted model of the same protein · chain A against A, TM-score 0.97

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