MolNFT v2 · #126673 · protein

Crystal structure of the Tpr Domain of Sgt2.

5LYP: “Crystal structure of the Tpr Domain of Sgt2.”. X-ray diffraction at 1.55, 1 ligand (BO4). MolNFT v2 #126673 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5LYP
Type: protein
Length: 137 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.55
Source: Saccharomyces cerevisiae
UniProt: Q12118
Ligands: BO4

Structure

x-ray diffraction · resolution 1.55 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	137	—	Q12118

Ligands and binding sites

BO4 · Borate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5LYP · Crystal structure of the tpr domain of SGT2. · the same entry in another collection · chain A against A, TM-score 1.00
Q12118 · AlphaFold monomer V2.0 prediction for small glutamine-rich tetratricopeptide… · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12118
Elsewhere: RCSB PDB 5LYP · PDBe 5LYP · UniProt Q12118

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