MolNFT v2 · #126369 · protein
tRNA guanine Transglycosylase (TGT) in co-crystallized complex (space group C2) with 6-amino-2-(methylamino)-4-(2-((2R,3R,4S,5R,6S)-3,4,5,6-tetramethoxytetrahydro-2H-pyran-2-yl)ethyl)-1H-imidazo[4,5-g]quinazolin-8(7H)-one
5LPS: “tRNA guanine Transglycosylase (TGT) in co-crystallized complex (space group C2) with…”. X-ray diffraction at 1.27, 2 ligands (726, ZN). MolNFT v2 #126369 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LPS
- Type
- protein
- Length
- 341 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.27
- Source
- Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
- UniProt
- P28720
- Ligands
- 726, ZN
Structure
x-ray diffraction · resolution 1.27 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 341 | — | P28720 |
Ligands and binding sites
- 726 · 6-azanyl-2-(methylamino)-4-[2-[(2~{R},3~{R},4~{S}, 5~{R},6~{S})-3,4,5,6-tetramethoxyoxan-2-yl]ethyl]-1,7-dihydroimidazo[4,5-g]quinazolin-8-one · ligand · chains A
- ZN · Zinc ion · metal · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LPS · TRNA guanine transglycosylase (tgt) in co-crystallized complex (space group C2) with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28720
- Elsewhere: RCSB PDB 5LPS · PDBe 5LPS · UniProt P28720
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