MolNFT v2 · #126263 · protein + RNA
Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)
5LMP: “Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)”. Electron microscopy at 5.35, 2 ligands (MG, ZN). MolNFT v2 #126263 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LMP
- Type
- protein + RNA
- Length
- 4,156 residues
- Chains
- 24
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 5.35
- Source
- Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579); Thermus thermophilus…
- UniProt
- P80371, P80372, P80373, Q5SHQ5, Q5SLP8, P17291, Q5SHQ2, P80374, Q5SHN7, P80376, Q5SHN3, P80377, Q5SHQ1, Q5SJ76, Q5SJH3, Q5SHP7, Q5SLQ0, Q5SHP2, P80380, Q5SIH3, Q5SHR1, Q5SKU2
- Ligands
- MG, ZN
Structure
electron microscopy · resolution 5.35 · 24 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 1514 | — | — |
| B | — | protein | 234 | — | P80371 |
| C | — | protein | 206 | — | P80372 |
| D | — | protein | 208 | — | P80373 |
| E | — | protein | 150 | — | Q5SHQ5 |
| F | — | protein | 101 | — | Q5SLP8 |
| G | — | protein | 155 | — | P17291 |
| H | — | protein | 138 | — | Q5SHQ2 |
| I | — | protein | 127 | — | P80374 |
| J | — | protein | 98 | — | Q5SHN7 |
| K | — | protein | 119 | — | P80376 |
| L | — | protein | 124 | — | Q5SHN3 |
| M | — | protein | 117 | — | P80377 |
| N | — | protein | 60 | — | Q5SHQ1 |
| O | — | protein | 88 | — | Q5SJ76 |
| P | — | protein | 83 | — | Q5SJH3 |
| Q | — | protein | 99 | — | Q5SHP7 |
| R | — | protein | 73 | — | Q5SLQ0 |
| S | — | protein | 80 | — | Q5SHP2 |
| T | — | protein | 99 | — | P80380 |
| V | — | protein | 24 | — | Q5SIH3 |
| W | — | protein | 71 | — | Q5SHR1 |
| X | — | protein | 168 | — | Q5SKU2 |
| Y | — | rna | 20 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 108 copies · chains A, Q, E, K, W
- ZN · Zinc ion · metal · 2 copies · chains D, N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LMP · Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C) · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80371
- Every structure of UniProt P80372
- Every structure of UniProt P80373
- Every structure of UniProt Q5SHQ5
- Every structure of UniProt Q5SLP8
- Every structure of UniProt P17291
- Every structure of UniProt Q5SHQ2
- Every structure of UniProt P80374
- Every structure of UniProt Q5SHN7
- Every structure of UniProt P80376
- Every structure of UniProt Q5SHN3
- Every structure of UniProt P80377
- Every structure of UniProt Q5SHQ1
- Every structure of UniProt Q5SJ76
- Every structure of UniProt Q5SJH3
- Every structure of UniProt Q5SHP7
- Every structure of UniProt Q5SLQ0
- Every structure of UniProt Q5SHP2
- Every structure of UniProt P80380
- Every structure of UniProt Q5SIH3
- Every structure of UniProt Q5SHR1
- Every structure of UniProt Q5SKU2
- Elsewhere: RCSB PDB 5LMP · PDBe 5LMP · UniProt P80371 · UniProt P80372 · UniProt P80373 · UniProt Q5SHQ5 · UniProt Q5SLP8 · UniProt P17291 · UniProt Q5SHQ2 · UniProt P80374 · UniProt Q5SHN7 · UniProt P80376 · UniProt Q5SHN3 · UniProt P80377 · UniProt Q5SHQ1 · UniProt Q5SJ76 · UniProt Q5SJH3 · UniProt Q5SHP7 · UniProt Q5SLQ0 · UniProt Q5SHP2 · UniProt P80380 · UniProt Q5SIH3 · UniProt Q5SHR1 · UniProt Q5SKU2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.