MolNFT v2 · #125721 · protein
Structure of Caulobacter crescentus VapBC1 (VapB1deltaC:VapC1 form)
5L6M: “Structure of Caulobacter crescentus VapBC1 (VapB1deltaC:VapC1 form)”. X-ray diffraction at 1.9. MolNFT v2 #125721 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5L6M
- Type
- protein
- Length
- 1,173 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.9
- Source
- Caulobacter crescentus (strain ATCC 19089 / CB15)
- UniProt
- Q9AC34, Q9AC35
Structure
x-ray diffraction · resolution 1.9 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 66 | — | Q9AC34 |
| B, C, F, G, J, K | — | protein | 127 | — | Q9AC35 |
| D | — | protein | 71 | — | Q9AC34 |
| E | — | protein | 66 | — | Q9AC34 |
| H, L | — | protein | 70 | — | Q9AC34 |
| I | — | protein | 68 | — | Q9AC34 |
Ligands and binding sites
- MLI · Malonate ion · additive · 3 copies · chains A, B, D, C, H, G
- GOL · Glycerol · additive · 2 copies · chains B, C, D, I, J, K, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5L6M · Structure of caulobacter crescentus VAPBC1 (VAPB1DELTAC:VAPC1 form) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AC34
- Every structure of UniProt Q9AC35
- Elsewhere: RCSB PDB 5L6M · PDBe 5L6M · UniProt Q9AC34 · UniProt Q9AC35
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