MolNFT v2 · #125114 · protein
Nitrogenase MoFeP protein in the IDS oxidized state
5KOJ: “Nitrogenase MoFeP protein in the IDS oxidized state”. X-ray diffraction at 2.592, 4 ligands (HCA, ICS, CLF). MolNFT v2 #125114 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KOJ
- Type
- protein
- Length
- 1,981 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.592
- Source
- Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
- UniProt
- A9H5W5, A9H5W8
- Ligands
- HCA, ICS, CLF, FE
Structure
x-ray diffraction · resolution 2.592 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 481 | — | A9H5W5 |
| B, D | — | protein | 510 | — | A9H5W8 |
| C | — | protein | 480 | — | A9H5W5 |
Ligands and binding sites
- HCA · 3-hydroxy-3-carboxy-adipic acid · ligand · 2 copies · chains A, B, C, D
- ICS · iron-sulfur-molybdenum cluster with interstitial carbon · ligand · 2 copies · chains A, C
- CLF · FE(8)-S(7) cluster · ligand · 2 copies · chains A, B, C, D
- FE · Fe (III) ion · metal · 2 copies · chains B, C, D, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KOJ · Nitrogenase mofep protein in the ids oxidized state · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9H5W5
- Every structure of UniProt A9H5W8
- Elsewhere: RCSB PDB 5KOJ · PDBe 5KOJ · UniProt A9H5W5 · UniProt A9H5W8
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