MolNFT v1 · #124755 · protein
Nitrogenase mofep protein in the ids oxidized state
5KOJ: “Nitrogenase mofep protein in the ids oxidized state”. X-ray diffraction, 4 ligands (HCA, ICS, CLF). MolNFT v1 #124755 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KOJ
- Type
- protein
- Length
- 1,981 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A9H5W5, A9H5W8
- Ligands
- HCA, ICS, CLF, FE
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 481 | — | A9H5W5 |
| B, D | — | protein | 510 | — | A9H5W8 |
| C | — | protein | 480 | — | A9H5W5 |
Ligands and binding sites
- HCA · 3-hydroxy-3-carboxy-adipic acid · ligand · 2 copies · chains A, B, C, D
- ICS · iron-sulfur-molybdenum cluster with interstitial carbon · ligand · 2 copies · chains A, C
- CLF · FE(8)-S(7) cluster · ligand · 2 copies · chains A, B, C, D
- FE · Fe (III) ion · metal · 2 copies · chains B, C, D, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KOJ · Nitrogenase MoFeP protein in the IDS oxidized state · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9H5W5
- Every structure of UniProt A9H5W8
- Elsewhere: RCSB PDB 5KOJ · PDBe 5KOJ · UniProt A9H5W5 · UniProt A9H5W8
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